{"id":281,"date":"2015-05-29T15:33:32","date_gmt":"2015-05-29T14:33:32","guid":{"rendered":"http:\/\/wp.cs.ucl.ac.uk\/gift-surg-intranet\/?p=281"},"modified":"2015-05-29T15:33:32","modified_gmt":"2015-05-29T14:33:32","slug":"dzhoshkun-shakir-tom-doel-mar-2015","status":"publish","type":"post","link":"https:\/\/wp1.cs.ucl.ac.uk\/gift-surg-intranet\/2015\/05\/29\/dzhoshkun-shakir-tom-doel-mar-2015\/","title":{"rendered":"Dzhoshkun Shakir, Tom Doel: Mar 2015"},"content":{"rendered":"<ol>\n<li>Meeting with Paul Ganney (Head of Scientific Computing) and James Moggridge at UCLH\n<ul>\n<li>As suggested by Gareth Askey, we met with Paul and James to discuss our requirements and identify a computer for installing our uploader software<\/li>\n<li>Anna David participated as well<\/li>\n<li>The best option seems to have our software running on a virtual server within the Fetal Medicine Unit (FMU). James will liaise with the relevant people to arrange for this.<\/li>\n<\/ul>\n<\/li>\n<li>Initialised GIFT-Proto\n<ul>\n<li>Currently based purely on NiftyView<\/li>\n<li>The aim is to have it building against a pre-build NifTK<\/li>\n<\/ul>\n<\/li>\n<li>GIFT-Cloud extension of XNAT\n<ul>\n<li>First development iteration complete, with a modified schema allowing for storing subject pseudonyms and query-retrieving them.<\/li>\n<li>Unit\/integration tests for introduced components in the codebase<\/li>\n<li>System tests with Ruby for the relevant REST calls<\/li>\n<li>This version to be tagged GC-1.1.0<\/li>\n<\/ul>\n<\/li>\n<li>Requested a virtual machine for GIFT-Cloud, as well as an initial project store of 2TB for storing the patient data<\/li>\n<li>GIFT-Cloud uploader application\n<ul>\n<li>Started merging the relevant portions of the DicomCleaner and XNAT uploader applet codebases<\/li>\n<\/ul>\n<\/li>\n<li>IGI journal club presentations on software\n<ul>\n<li>Different aspects of software design and engineering presented, as one aim of GIFT-Surg is to develop high quality, state-of-the-art software for clinical use.<\/li>\n<li>Tom: clinical software design\n<ul>\n<li>ways to think about user experience (UX)<\/li>\n<li>how we can improve UX\u00a0using simple design concepts<\/li>\n<li>why and how software design differs between research and industry<\/li>\n<li>how good visual design fits well with good software architecture.<\/li>\n<\/ul>\n<\/li>\n<li>Dzhoshkun: benchmarks comparing various aspects of different programming languages\n<ul>\n<li>popular programming languages chosen: C++, Java, Python, Ruby<\/li>\n<li>graphs and measurements shown, related to different benchmarks<\/li>\n<li>different benchmarks chosen to reflect different aspects of software such as runtime, code size, resource requirements, etc.<\/li>\n<\/ul>\n<\/li>\n<\/ul>\n<\/li>\n<li>Continuous integration (CI) for software development at CMIC\n<ul>\n<li>CI is important for maintaining large-scale software, developed and used by multiple users<\/li>\n<li>It helps detect faults at an early stage<\/li>\n<li>It also helps ensure that newly introduced components do not break the existing stable infrastructure<\/li>\n<li>Time invested into setting up CI components on the distributed architecture that supports NifTK development<\/li>\n<\/ul>\n<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"<p>Meeting with Paul Ganney (Head of Scientific Computing) and James Moggridge at UCLH As suggested by Gareth Askey, we met with Paul and James to discuss our requirements and identify a computer for installing our uploader software Anna David participated<\/p>\n","protected":false},"author":32,"featured_media":0,"comment_status":"open","ping_status":"open","sticky":false,"template":"","format":"standard","meta":{"footnotes":""},"categories":[4],"tags":[],"class_list":["post-281","post","type-post","status-publish","format-standard","hentry","category-electronic-journal"],"yoast_head":"<!-- This site is optimized with the Yoast SEO plugin v27.3 - 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