Academic Journals

2017

  • Finlay MC, Mosse CA, Colchester RJ, Noimark S, Zhang EZ, Ourselin S, Beard PC, Schilling RJ, Parkin IP, Papakonstantinou IP, Desjardins AE, Through-Needle All-Optical Ultrasound Imaging In Vivo, Light: Science and Applications (2017) Nature, 16 June 2017 (paper)
  • Xia W, Noimark S, Ourselin S, West SJ, Finlay MC, David AL, Desjardins AE, Ultrasonic Needle Tracking with a Fibre-optic Ultrasound Transmitter for Guidance of Minimally Invasive Fetal Surgery (2017), MICCAI 2017 (in press)
  • Xia W, West SJ, Mari J-M, Ourselin S, David AL, Desjardins AE, Looking beyond the imaging plane: 3D needle tracking with a linear array ultrasound probe (2017), (Scientific Reports, in press)
  • Alles EJ, Fook Sheung N, Noimark S, Zhang EZ, Beard PC and Desjardins AE, A reconfigurable all-optical ultrasound transducer array for 3D endoscopic imaging (2017), (Scientific Reports 7 1208)
  • Hill ER, Xia W, Clarkson MJ, and Desjardins AE (2016), Identification and removal of laser-induced noise in photoacoustic imaging using singular value decomposition, (Biomedical Optics Express 8(1))
  • Ansari R, Zhang E, Desjardins AE, Beard PC (2017) All-optical endoscopic probe for high resolution 3D photoacoustic tomography (Proc. SPIE. 10064, Photons Plus Ultrasound: Imaging and Sensing, 100641W doi: 10.1117/12.2250617)
  • Ansari, R., Zhang, E., Desjardins, A. E., & Beard, P. C. All-optical endoscopic probe for high resolution 3D photoacoustic tomography (SPIE BiOS. International Society for Optics and Photonics, 2017)
  • PhD Alain Devreker Design and Control of Continuum Robots for Minimally Invasive Surgical Applications (June 8, 2017)
  • Poduval RK, Noimark S, Colchester RJ, Macdonald TJ, Parkin IP, Desjardins AE, Papakonstantinou I (2017) Optical fiber ultrasound transmitter with electrospun carbon nanotube-polymer composite (Applied Physics Letters. 110, 223701 doi: 10.1063/1.4984838)
  • Alles EJ, Fook Sheung N, Noimark S, Zhang EZ, Beard PC and Desjardins AE (2017) A reconfigurable all-optical ultrasound transducer array for 3D endoscopic imaging (Scientific Reports 7 1208)
  • Hill ER, Xia W, Clarkson MJ and Desjardins AE (2017) Identification and removal of laser-induced noise in photoacoustic imaging using singular value decomposition (Biomedical Optics Express 8(1) 68-77)
  • Dwyer G., et al. A Continuum Robot and Control Interface for Surgical Assist in Fetoscopic Interventions (IEEE Robotics and Automation Letters, art.nr. LRA.2017.2679902, 2017)

2016

  • Xia W, West SJ, Mari JM, Ourselin S, David AL and Desjardins AE (2016) 3D Ultrasonic Needle Tracking with a 1.5 D Transducer Array for Guidance of Fetal Interventions  (International Conference on Medical Image Computing and Computer-Assisted Intervention. S. Ourselin et al. (Eds.): MICCAI 2016, Part I, LNCS 9900, pp. 353–361, 2016. DOI: 10.1007/978-3-319-46720-7_41)
  • Noimark S, Colchester RJ, Blackburn BJ, Zhang EZ, Alles EJ, Ourselin S, Beard PC, Papakonstantinou I, Parkin IP, Desjardins AE (2016) Carbon-Nanotube–PDMS Composite Coatings on Optical Fibers for All-Optical Ultrasound Imaging (Advanced Functional Materials doi:10.1002/adfm.201601337)
  • Alles EJ, Noimark S, Zhang E, Beard PC, Desjardins AE (2016) Pencil beam all-optical ultrasound imaging (Biomedical Optics Express 7(9) 3696-37)
  • Xia W, Ginsberg Y, West SJ, Nikitichev DI, Ourselin S, David AL, Desjardins AE (2016) Coded excitation ultrasonic needle tracking: An in vivo study (Medical Physics 43(7):4065-73)
  • Hill ER, Xia W, Nikitichev DI, Gurusamy K, Beard PC, Hawkes DJ, Davidson BR, and Desjardins AE (2016) Interventional multi-spectral photoacoustic imaging in laparoscopic surgery  (Proc. of SPIE, Vol. 9708, paper 97080B)
  • Xia W, West SJ, Nikitichev DI, Ourselin S, Beard PC, and Desjardins AE (2016). Interventional multispectral photoacoustic imaging with a clinical linear array ultrasound probe for guiding nerve blocks ​​​​ (Proc. of SPIE, Vol. 9708, paper 97080C)
  • Tom Doel, Dzhoshkun I. Shakir, Rosalind Pratt, Michael Aertsen, James Moggridge, Erwin Bellon, Anna L. David, Jan Deprest, Tom Vercauteren, Sébastien Ourselin GIFT-Cloud: A data sharing and collaboration platform for medical imaging research (Computer Methods and Programs in Biomedicine, November 2016) [read paper]
  • Guotai Wang , Maria A. Zuluaga, Rosalind Pratt, Michael Aertsen, Tom Doel, Maria Klusmann, Anna L. David, Jan Deprest, Tom Vercauteren, Sébastien Ourselin Slic-Seg: A Minimally Interactive Segmentation of the Placenta from Sparse and Motion-Corrupted Fetal MRI in Multiple Views (Medical Image Analysis, May 2016)
  • Nikitichev, Daniil; Xia, Wenfeng; Hill, Emma; Mosse, Alexander; Perkins, Tim; Konyn, Katie; Ourselin, Sebastien; Desjardins, Adrien; Vercauteren, Tom Music-of-Light Stethoscope: A Demonstration of the Photoacoustic Effect (Physics Education, April 2016)
  • Pankaj Daga, François Chadebecq, Dzhoshkun I. Shakir, Luis Carlos G. Herrera, Marcel Tella, George Dwyer, Anna L. David, Jan Deprest, Danail Stoyanov, Tom Vercauteren, Sebastien Ourselin Real-time mosaicing of fetoscopic videos using SIFT Proc. SPIE 9786, Medical Imaging 2016: Image-Guided Procedures, Robotic Interventions, and Modeling, 97861R (March 18, 2016)
  • Ebner M, Aertsen M, Pratt R, David AL, Pandya PP, Deprest J, Kendall G, Klusmann M, Humphries P, Hewitt R, Atkinson D, Vercauteren T, Ourselin S. Volumetric MRI Reconstruction of Trachea in Fetuses with Complex Fetal Neck Masses (IPEM Conferenece on Fetal, Neonatal and Paediatric MR Imaging, April 2016)

2015

  • Gruijthuijsen, C., Rosa, B., Snyers, H., Engels, A., Vercauteren, T., Deprest, J., Ourselin, S., Reynaerts, D., Vander Poorten, E. (2015). Prototyping Novel Instruments for Fetal Surgery through Virtual Reality Simulation and 3D Printing. (Proceedings of the 5th Joint Workshop on New Technologies for Computer/Robot Assisted Surgery. Joint Workshop on New Technologies for Computer/Robot Assisted Surgery (pp. 98-101)).
  • Devreker, A., Rosa, B., Desjardins, A., Alles, E., Garcia-Peraza, L., Maneas, E., Stoyanov, D., David, A., Vercauteren, T., Deprest, J., Ourselin, S., Reynaerts, D., Vander Poorten, E. (2015). Fluidic actuation for intra-operative in situ imaging.  (2015 IEEE/RSJ International Conference on Intelligent Robots and Systems. Hamburg, 28 September – 2 October 2015 (pp. 1415-1421))
  • Devreker, A., Rosa, B., Qian, J., Vercauteren, T., Ourselin, S., Vander Poorten, E., Reynaerts, D. (2015). Design and Validation of Pneumatically Actuated Fetoscope. Proceedings of the 5th Joint Workshop on New Technologies for Computer/Robot Assisted Surgery. Joint Workshop on New Technologies for Computer/Robot Assisted Surgery (pp. 127-129).
  • Maria A. Zuluaga, Ninon Burgos, Alex F. Mendelson, Andrew M. Taylor, and Sébastien Ourselin: Voxelwise Atlas Rating for Computer Assisted Diagnosis: Application to Congenital Heart Diseases of the Great Arteries, Medical Image Analysis, 2015. MedIA: Voxelwise Atlas Rating for Computer Assisted Diagnosis: Application to Congenital Heart Diseases of the Great Arteries. Published: 17 September 2015, Download it as Open Access.
  • Wang, G., Zuluaga, M.A., Pratt, R., Aertsen, M., David, A.L., Deprest, J., …Ourselin, S. (2015). Slic-Seg: Slice-by-slice Segmentation Propagation of the Placenta in Fetal MRI using One-plane Scribbles and Online Learning. MICCAI 2015, the 18th International Conference on Medical Image Computing and Computer Assisted Intervention Munich, Germany.
  • Xia, D. I. Nikitichev, J. M. Mari, S. J. West, S. Ourselin, P. C. Beard and A. E. Desjardins, “An interventional multispectral photoacoustic imaging platform for the guidance of minimally invasive procedures“, Proc. SPIE 9539, Opto-Acoustic Methods and Applications in Biophotonics II, 95390D (2015).
  • Xia, C. A. Mosse, R. J. Colchester, J. M. Mari, D. I. Nikitichev, S. J. West, S. Ourselin, P. C. Beard, and A. E. Desjardins, “Fiber optic photoacoustic probe with ultrasonic tracking for guiding minimally invasive procedures”, Proc. SPIE 9539, Opto-Acoustic Methods and Applications in Biophotonics II, 95390K (2015).
  • Xia, E. Maneas, D. I. Nikitichev, C. A. Mosse, G. Sato dos Santos, T. Vercauteren, A. David, J. Deprest, S. Ourselin, P. C. Beard, A. E. Desjardins, “Interventional photoacoustic imaging of the human placenta with ultrasonic tracking for minimally invasive fetal surgeries”, MICCAI 2015, the 18th International Conference on Medical Image Computing and Computer Assisted Intervention, in press, (2015).
  • Xia, D. I. Nikitichev, J. M. Mari, S. J. West, R. Pratt, A. L. David, S. Ourselin, P. C. Beard and A. E. Desjardins, “Performance characteristics of an interventional multispectral photoacoustic imaging system for guiding minimally invasive procedures”, J. Biomed. Opt. in press, (2015).
  • S. dos Santos, E. Maneas, D. I. Nikitichev, A. Barburas, A. L. David, J. Deprest, A. E. Desjardins, T. Vercauteren, S. Ourselin, “A Registration Approach to Endoscopic Laser Speckle Contrast Imaging for Intrauterine Visualisation of Placental Vessels”, MICCAI 2015, the 18th International Conference on Medical Image Computing and Computer Assisted Intervention, in press, (2015).
  • Ansari, E. Zhang, S. J. Mathews, A. E. Desjardins, and P. C. Beard, “Photoacoustic endoscopy probe using a coherent fibre-optic bundle”, Proc. SPIE 9539, Opto-Acoustic Methods and Applications in Biophotonics II, 953905 (2015).
  • Devreker, B. Rosa, A. Desjardins, E.J. Alles, L.C. Garcia-Peraza, E. Maneas, D.Stoyanov,  A.L. David, T. Vercauteren, J. Deprest, S. Ourselin, D. Reynaerts, E. Vander Poorten, “Fluidic actuation for intra-operative in situ imaging”, 2015 IEEE/RSJ International Conference on Intelligent Robots and Systems (IROS), (accepted).
  • Maneas, E., Sato dos Santos, G., Deprest, J., Wimalasundera, R., David, A.L., Vercauteren, T., Ourselin, S. (2015). Adaptive Filtering of Fibre-optic Fetoscopic Images for Fetal Surgery. Hamlyn Symposium on Medical Robotics London.
  • Chadebecq, F., Vercauteren, T., Wimalasundera, R., Attilakos, G., David, A.L., Deprest, J., Stoyanov, D. (2015). Practical Dry Calibration With Medium Adaptation For Fluid-Immersed Endoscopy. Hamlyn Symposium on Medical Robotics London.
  • Pratt RJ, Deprest J, Vercauteren T, Ourselin S, David AL, Perinatal Diagnosis, In Press (2015). Computer-assisted surgical planning and intraoperative guidance in fetal surgery: a systematic review.
  • Pratt RJ, Deprest J, Vercauteren T, Ourselin S, David AL (2015). Systematic review of 3D fetal image reconstruction for fetal surgical planning and intraoperative guidance. Joint International Fetal Medicine and Surgery Society (IFMSS) Annual Conference and Fetal Medicine Foundation (FMF) World Congress. Sunday 21st June 2015, Crete